PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G084900.1.p
Common NamePRUPE_ppa003839mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 549aa    MW: 59733.2 Da    PI: 8.5664
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G084900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15174233155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Prupe.1G084900.1.p 174 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 233
                         57*******************666664477446*************************98 PP

2AP247.15.8e-15276327155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Prupe.1G084900.1.p 276 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 327
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-22174243No hitNo description
SuperFamilySSF541711.44E-17174243IPR016177DNA-binding domain
PfamPF008473.2E-12174233IPR001471AP2/ERF domain
PROSITE profilePS5103219.23175241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-16175242IPR001471AP2/ERF domain
SMARTSM003803.5E-29175247IPR001471AP2/ERF domain
PRINTSPR003677.2E-6176187IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17276336IPR016177DNA-binding domain
CDDcd000181.03E-24276335No hitNo description
PfamPF008477.2E-10276327IPR001471AP2/ERF domain
PROSITE profilePS5103219.045277335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-18277335IPR001471AP2/ERF domain
SMARTSM003803.5E-33277341IPR001471AP2/ERF domain
PRINTSPR003677.2E-6317337IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDSSPQNWLL GFSLSNHSHH RHPSHDLSLF EAFTSSPSQT SAHQQQDHSN PGGATPPSPT  60
DLSIFSSGVR GPKLEDFLGG STATPTSLAH FSGTSAAADH HHNHQQTAPL ALSENEIYDS  120
ELKTIAASFL RGFSSPATAA ASSVQTTKPQ NLVPLASSEL TPKKTADTFG QRTSIYRGVT  180
RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGPTTTTNF  240
PVSNYERELN EMKNMTRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  300
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMGRYD VKSIANSNLP IGGMSGKSKN  360
SSDSDSKSIE GNRSADDRDL SSASSVTFAS QQPSSSTLSF AIPIKQDPST DYWSNIFGYH  420
HNAKNPSPVS VAPSSLFQSC TTNVPYGNNS SQIPFNMDFS VSATSSTSPS ETNNGYFGNY  480
NAHGQQQQQQ DQSTSGTNSI PFATPIALNS NNGFETSSGY GSWIGPSLHT FQTHAKTNLF  540
QTPIFGME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225627.10.0hypothetical protein PRUPE_ppa003839mg
SwissprotQ6PQQ31e-156AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM5XMV70.0M5XMV7_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-149AINTEGUMENTA-like 5