PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G084900.1.p
Common NamePRUPE_ppa003839mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 549aa    MW: 59733.2 Da    PI: 8.5664
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G084900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15174233155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Prupe.1G084900.1.p 174 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 233
                         57*******************666664477446*************************98 PP

2AP247.15.8e-15276327155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Prupe.1G084900.1.p 276 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 327
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-22174243No hitNo description
SuperFamilySSF541711.44E-17174243IPR016177DNA-binding domain
PfamPF008473.2E-12174233IPR001471AP2/ERF domain
PROSITE profilePS5103219.23175241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-16175242IPR001471AP2/ERF domain
SMARTSM003803.5E-29175247IPR001471AP2/ERF domain
PRINTSPR003677.2E-6176187IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17276336IPR016177DNA-binding domain
CDDcd000181.03E-24276335No hitNo description
PfamPF008477.2E-10276327IPR001471AP2/ERF domain
PROSITE profilePS5103219.045277335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-18277335IPR001471AP2/ERF domain
SMARTSM003803.5E-33277341IPR001471AP2/ERF domain
PRINTSPR003677.2E-6317337IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDSSPQNWLL GFSLSNHSHH RHPSHDLSLF EAFTSSPSQT SAHQQQDHSN PGGATPPSPT  60
DLSIFSSGVR GPKLEDFLGG STATPTSLAH FSGTSAAADH HHNHQQTAPL ALSENEIYDS  120
ELKTIAASFL RGFSSPATAA ASSVQTTKPQ NLVPLASSEL TPKKTADTFG QRTSIYRGVT  180
RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGPTTTTNF  240
PVSNYERELN EMKNMTRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  300
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMGRYD VKSIANSNLP IGGMSGKSKN  360
SSDSDSKSIE GNRSADDRDL SSASSVTFAS QQPSSSTLSF AIPIKQDPST DYWSNIFGYH  420
HNAKNPSPVS VAPSSLFQSC TTNVPYGNNS SQIPFNMDFS VSATSSTSPS ETNNGYFGNY  480
NAHGQQQQQQ DQSTSGTNSI PFATPIALNS NNGFETSSGY GSWIGPSLHT FQTHAKTNLF  540
QTPIFGME*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G084900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411230.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-155AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A251QUH00.0A0A251QUH0_PRUPE; Uncharacterized protein
STRINGEMJ268260.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-149AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]