PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G070500.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 282aa    MW: 29568.6 Da    PI: 9.8095
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G070500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-3637152389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                         +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  ++++ss+     
  Prupe.1G070500.3.p  37 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGAPSSApsstt 126
                         79*************************************************************99999666.4444444444444434444 PP

                 TCP  89 .........................k 89 
                                                  +
  Prupe.1G070500.3.p 127 tsdhkphllggptpfilgkrvrgahD 152
                         44455566666666666544444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3342162IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2094296IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSNSEAPNNE LTNGGGGGGM VEQQASQRPS SNGVLSVKKP PSKDRHSKVD GRGRRIRMPI  60
ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGAPSS  120
APSSTTTSDH KPHLLGGPTP FILGKRVRGA HDDDNGNHNH SHDAKDPSDH ANDGAVSVVG  180
HSMASMLGPT AGGPGGFWAP HFGQVWSFAA TPPPEMMAQS AVSHQQHQQH QQQQHSLFLQ  240
QQPMGEASAA RVGNYLPGHL NLLASLSGGH GNSGRREDNP R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.1180.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G070500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407986e-75AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047766e-75AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149586e-75AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126106e-75CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410109.10.0transcription factor TCP7-like
RefseqXP_020410110.10.0transcription factor TCP7-like
SwissprotQ9FMX21e-90TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A251QTQ60.0A0A251QTQ6_PRUPE; Uncharacterized protein
STRINGXP_008365949.11e-155(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-70TCP family protein