PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G021200.1.p
Common NamePRUPE_ppa1027143mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 356aa    MW: 41166.8 Da    PI: 4.6549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G021200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.21e-36341262103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d+++++++sws+++nsfvvld+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+
  Prupe.1G021200.1.p  34 FLTKTYDIVDDPTTNDIVSWSRDNNSFVVLDPQKFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANQGFLRGQKH 115
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Prupe.1G021200.1.p 116 LLKNIRRRKTS 126
                         ********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3929123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5930123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-3530123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNSDQDPVSL SSSGAAPDHP LPMEKLYDQG PPPFLTKTYD IVDDPTTNDI VSWSRDNNSF  60
VVLDPQKFSM SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANQGFL RGQKHLLKNI  120
RRRKTSYHPQ ASQKALDSCV EVGKFGLDGE IDQLRRDKQV LMGELVKLRQ QQQTTRVYLH  180
GMENRLKRTE MKQQHLMNFL ARAMQNPNFV QQLAQQKDKR NELEEAITKK RRRPIEQGPS  240
SFEVDELGQV GVETFVKVEP EEYDDISDHF ENPDLDTFAI DMQGITGSQN VHDEEECIEK  300
EERNESGSKD QDKSFWHELL NESIDEEIGM LGVQEEDEDV DVFVEELVYL ASSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273212618123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224584.10.0hypothetical protein PRUPE_ppa1027143mg
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM5XVS40.0M5XVS4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B