PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G008400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 410aa    MW: 45352.9 Da    PI: 8.2665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G008400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20220269356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Prupe.1G008400.1.p 220 FRGVRQRH-WGKWVAEIRLPRN---RARVWLGTFDTAEEAAMAYDTAAYMLRGE 269
                         8******9.**********955...5*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-32218278No hitNo description
SMARTSM003802.5E-36219282IPR001471AP2/ERF domain
PROSITE profilePS5103222.879219276IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22219277IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-32219277IPR001471AP2/ERF domain
PRINTSPR003679.7E-11220231IPR001471AP2/ERF domain
PfamPF008477.4E-14220269IPR001471AP2/ERF domain
PRINTSPR003679.7E-11242258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDGKFPKLET FVAKQLPSYF SRMASDNGSN LIGDPAIWCG SVSKSSLSPE SSSSSTEEFS  60
SSGSNLIDNM PGLTKSPFVP VNFLDTFPQL SRVQEPNLLD PSSLSSSSSS TQVEVVDSLG  120
KTKGCDEPSM FPYLSIPSFP TPQVIDQIQR QPGMIEWLKL NQNLASHSSK GFNDYWLSTT  180
KTQPMKHTGR SSRLQQQINQ HRKQPHNNLS SAASTPGKLF RGVRQRHWGK WVAEIRLPRN  240
RARVWLGTFD TAEEAAMAYD TAAYMLRGEH AHLNFPDLKH QLKANALKGT TAALLEAKLQ  300
AITSSQAHQK AIMESKSSQL ASPNKHSADD HDDHKYSNLM INSNFSQNPT RKEWQFGLES  360
KVGSDHQVVI ESKKSKQDLV SADVDAVQLS RMPSLDMDMI WDALLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21217276363ATERF1
3gcc_A3e-21217276363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G008400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417842.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A251QQU90.0A0A251QQU9_PRUPE; Uncharacterized protein
STRINGXP_008224508.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-55ERF family protein