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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_8580V3.1.p | ||||||||
Common Name | PHYPADRAFT_160637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 536aa MW: 58448.6 Da PI: 6.175 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 8.7e-31 | 294 | 349 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+ Fv+a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pp3c9_8580V3.1.p 294 KARRCWSPELHRLFVNALHQLGGSQIATPKQIRELMKVDGLTNDEVKSHLQKYRLH 349 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.237 | 290 | 351 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-17 | 292 | 352 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-28 | 292 | 352 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 294 | 349 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-8 | 296 | 347 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MGSPIDLTLG CNTQAPSSNG RYNDHRNSSA CLEDCLESLR KAEDYVRTLE EERRKVEGFK 60 RELPLCIQLL EDAIRTSKEK LLRGKDLPQQ LKANSMDSGK DQHGVSSGPG CRHTLEEFMP 120 LKRRWERDQP SVSSDGERGE DRSSKRPAWM TEALLSKRTP ASPEKETRLT QEHSELSVSE 180 QEHSWVTSSQ MLLGANQRPT GAFLPFIREQ HGVNSFLSRP TPRPAGSGAD LSLSLCEPTT 240 TQTGHTLRPS GSEVGSIDAG RQTVDVPVAE DMGVISNGTS GAGSSSVGGN PSRKARRCWS 300 PELHRLFVNA LHQLGGSQIA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSSSPQPA 360 GAGQSPKLVV LGGIWVPPQY AASGSQPSSG VYDPSIAHPP QPTEFCPTSL PQDYFACINN 420 DTSSVSLQMH RQPIFEQPIF EQPKQAGTSQ SQNSPQGPLH VTSQLSSATQ GPSSEVYHDE 480 SPGEEEAKSE GTSWQREDLK SEEPTKPNVR FSLGAGSGDV QSHAHASEEE ENQIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 294 | 347 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 294 | 347 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 294 | 347 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 294 | 347 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17539 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383945.1 | 0.0 | transcription factor HHO2-like | ||||
TrEMBL | A9RRP7 | 0.0 | A9RRP7_PHYPA; Predicted protein | ||||
STRING | PP1S24_189V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4303 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-64 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_8580V3.1.p |
Entrez Gene | 5919937 |
Publications ? help Back to Top | |||
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