PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_18600V3.2.p
Common NamePHYPADRAFT_229964
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 480aa    MW: 51751.8 Da    PI: 6.1396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_18600V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.3e-15237286155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h  +Er+RR+++N++f+ Lr ++Pka     +K +Ka+i+  +++Y+ +L+
  Pp3c9_18600V3.2.p 237 QRENHILAERQRREEMNEKFSALRAMIPKA-----TKKDKASIVGDTIDYVLELE 286
                        79****************************.....9***************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.469236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-12237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-15237290No hitNo description
Gene3DG3DSA:4.10.280.102.0E-17237298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16237300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-13242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.0E-5397464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDQRRTSAAQ PALPSSLLLS EDLYDLLQGN RFSTTTSTTS ASPTTSTLSS GAATTLSDVK  60
SNPNSLQDPL NHFIFDQIAP APGALKMEPE IGDFMSNSYN WMPTTQLYNV DSLSCLTNYN  120
TNHLPHQLPS TSQFSYSPPQ PSVQSSSQIQ ALRDFMVYGN LADPIMPTPQ FSSAVSSRAT  180
TPIGNSLLYQ LDDVGTDSLI GISPGVQSKP QDMNLAYRAL CSEIYATERS PHRSQFQREN  240
HILAERQRRE EMNEKFSALR AMIPKATKKD KASIVGDTID YVLELEKRLK HLQACKDTAS  300
GSPFIRSLKR KSPSTSANTA SVHQDSPTDA VTKDCDAPDH RGTNPATTTT SSPSSTSPSR  360
EGHSAVNSPS DQVTQESKLQ QAGKKAAAAE VEVQSLGSRA VIKIVVERRP GHVLSVLNAL  420
EECKVEVMQS NVMTVGESSI HFVTVQLEEG ASASTEELVS AILQAINPPK AKGDPPPTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384191.10.0transcription factor FAMA-like isoform X1
TrEMBLA9SKT10.0A9SKT1_PHYPA; Predicted protein
STRINGPP1S89_172V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1527134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-17bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]