PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1800V3.2.p
Common NamePHYPADRAFT_80954
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 472aa    MW: 52901.6 Da    PI: 7.6071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1800V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09258303454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h  rEr+RRd++ ++f  L +llP+      +K + ++i+ + v Y+ksL
  Pp3c9_1800V3.2.p 258 EHILRERQRRDDMSNKFLMLESLLPPG-----PKRDRSTIVDHSVAYVKSL 303
                       6999*********************95.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-8249305No hitNo description
PROSITE profilePS5088812.963254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-12257320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-12257315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7258303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-7260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRGLSTIDME KGYHGSEVHS DAKASSFPLD LGAMLDGTES PLQKQVYEYF QDPLSFPESI  60
GQAQGEDGFS NAFPPYLTCS SPLEAGQSSF QSMHVEIIQA AATNVLRRRE PNGFLHDNGR  120
DETQITQYTS NTETRTSTVT QFTTNGSSAQ GQMQLRSTNR NCLPHQRLYS ADHKPGNDIE  180
SKFFHAPAPP KLVHSSKPAN SHVSGENSDY ETSCSPNAQK TTGRELLSPQ LRTVRSHKSQ  240
RIGCEQRMKS KRLTDQAEHI LRERQRRDDM SNKFLMLESL LPPGPKRDRS TIVDHSVAYV  300
KSLHECIKNL QEKRLEILKS NACSLSGVQI KGTPKQKKQK QNNSVAYNYV SSPDLRKEVL  360
NVAFLKSCAA REESESDTLG EERCIEKIEV HMDWPHQIVI EITCRPHPHI QSQIMKEMER  420
LEMDVSSCSI TKFHNHLVCV IILKPRVVKE PSITGDDVIE GLKSAIISKD S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333340PKQKKQKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384336.10.0uncharacterized protein LOC112286581
TrEMBLA0A2K1K1K80.0A0A2K1K1K8_PHYPA; Uncharacterized protein
STRINGPP1S90_162V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-10bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]