PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_17290V3.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 445aa    MW: 49776.6 Da    PI: 9.6292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_17290V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08182243455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                         h  rEr+RR ++ s+f+ L ++lP               ps   +Ka ++e A++ +k+Lq
  Pp3c8_17290V3.3.p 182 EHILRERKRRLDMASKFQVLESILPAGIkivvamnsasLKPSLSREKAVVVEDAIKLVKMLQ 243
                        5999**********************777*******99999999****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.347178242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.27E-8182263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-6182258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-4183243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS  60
VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS  120
VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP  180
EEHILRERKR RLDMASKFQV LESILPAGIK IVVAMNSASL KPSLSREKAV VVEDAIKLVK  240
MLQLRKEELL KRRSNLKLEL LIQSSEAPRY RRQSKTCPVP RKAGDKKFDA IQSNQPKHII  300
YKGGDLLKQI PPIVDRGKPI NTAWMTGNPQ NLIVPTSVHH NTAASRDIIS PENLRIHAQV  360
SEEEILVEIF LHRYPFNLQI RLFQSMESLK LDVVRCSILR LPFEFVECFI VAKPYVDSIT  420
WRLHEVRTAA SVLIEALQAN FKRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382107.10.0uncharacterized protein LOC112285477 isoform X1
TrEMBLA0A2K1K7Q00.0A0A2K1K7Q0_PHYPA; Uncharacterized protein
STRINGPP1S114_191V6.10.0(Physcomitrella patens)