PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_17290V3.2.p
Common NamePHYPADRAFT_166411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 430aa    MW: 48277.8 Da    PI: 9.5064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_17290V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08182228455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  rEr+RR ++ s+f+ L ++lP        K +Ka ++e A++ +k+Lq
  Pp3c8_17290V3.2.p 182 EHILRERKRRLDMASKFQVLESILPAG-----IKREKAVVVEDAIKLVKMLQ 228
                        5999*********************96.....59*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.808178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-8182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6182228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-10182248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5183228No hitNo description
SMARTSM003532.0E-4184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDTNFDEIFG DWQNQYFETL CPEINSCSES GVTSFLDDII DVKESVTLAS CPSNLEPSSS  60
VVFSTRANAP SVSSPLWALQ TPVSVAYIQN DVSSVTDKLL DQVVPSPELI SPMSTSSPGS  120
VKICINSGLK RQLQPLIAEQ SSSPSKRKKL NPASQSQIAP KTKELFKAFK QSVGSRIPTP  180
EEHILRERKR RLDMASKFQV LESILPAGIK REKAVVVEDA IKLVKMLQLR KEELLKRRSN  240
LKLELLIQSS EAPRYRRQSK TCPVPRKAGD KKFDAIQSNQ PKHIIYKGGD LLKQIPPIVD  300
RGKPINTAWM TGNPQNLIVP TSVHHNTAAS RDIISPENLR IHAQVSEEEI LVEIFLHRYP  360
FNLQIRLFQS MESLKLDVVR CSILRLPFEF VECFIVAKPY VDSITWRLHE VRTAASVLIE  420
ALQANFKRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382108.10.0uncharacterized protein LOC112285477 isoform X2
TrEMBLA0A2K1K7Q00.0A0A2K1K7Q0_PHYPA; Uncharacterized protein
STRINGPP1S114_191V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.19e-06bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]