PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_3790V3.14.p
Common NamePHYPADRAFT_167103
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 503aa    MW: 54322.4 Da    PI: 6.3413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_3790V3.14.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09115164154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL   v+ +k+L
  Pp3c7_3790V3.14.p 115 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVKDL 164
                        5677889*******************9997....79*************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-11114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.316114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-7115169No hitNo description
Gene3DG3DSA:4.10.280.101.8E-10115186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-6120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAASSNSWLH QNLLPQHNTQ QQGSPHSLFH HSEFPLHVDS TQPGPLQHMN LGHGGHGIDS  60
HPPLHHGMHS TLHMSVELQQ QQQQLQHPHP PVQVGSGTSG RAVGPTENGD TASVRKVHKA  120
DREKLRRDRL NEQFGELAGV LDPDRPKNDK ATILGDSVQV VKDLRSEVKR LKCEQTSLLD  180
ESRDLQQEKT ELREEKAALK TETEQLQNQL QQRLQGMLPW ISMDPTAALM GAPPYPYPHP  240
HPMPVPQPPS SAVPSSTPPA SEPAPAVPTS QPPVVGPSPF LSLAPPGVYM HPYAIYGARP  300
PERGHPYMPY PPYSASVGNH SHVERPYAQY PSPMSTMPGY MVQMQPPPPP YAVPGMTLVP  360
PGQQPRGPPH STYPPTSGPE TASLEPQGVE TSLQLQTPGG SSRPPSASEQ PPSQRGEDSN  420
KIPEVADLEL TPPGTKEAGD QAVSKPDEMN GGDAISSLTL ASKSLQSRTD DAPLPSRRSE  480
SNLEESRPHG STLEPSPSQA TE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381252.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381254.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381255.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381256.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381257.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381258.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381259.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381260.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381262.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381263.10.0pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381264.10.0pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A2K1KA960.0A0A2K1KA96_PHYPA; Uncharacterized protein
STRINGPP1S136_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-34bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]