PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_3190V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 430aa    MW: 47998.4 Da    PI: 8.4446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_3190V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11331378355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h ++ErrRR + ++ f+ Lr+l+P  +      K +Ka+iL  A+ Y+k+Lq
  Pp3c6_3190V3.1.p 331 MNHMMAERRRRVKQKENFSALRKLVPIiS------KADKASILGDAIVYLKDLQ 378
                       6899***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16330402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-12331382No hitNo description
PfamPF000101.4E-8331378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16332398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MYLPRSGVDV WQAYVNELNT LTDSTRWRVP STRPETDNIL QTPLPAKNQA LKYVKGSYKS  60
HSGTTSSSVS SLEDHGSKPQ VSVDSPAQNS LIFMDPASQR HRLGHRSDSH ASASSRRGAS  120
SHSREVQLQD ANTITAASQH ELRVVDDDVI NFNFEEEAQW QNLYHPPLDT TNLNQMSQLP  180
STSFEDVNMF NAPTVRNEPQ LPRQSTTSSI SAQSQGGQFK SWQHTRILAP MIQTDRTNQQ  240
LLRRCIDLMK TIPNLQQGAE RERSPVMNNT DSQERRVTSS SSPEAGLPDI SIAPDPFDQV  300
APSRGGHRPA RGGSRIATMG PIHAGHDEAA MNHMMAERRR RVKQKENFSA LRKLVPIISK  360
ADKASILGDA IVYLKDLQRQ IEELKESTAE TERRYEDLKI SYQSLEQRNK ELELLAGGAN  420
MRPASIPYP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377851.10.0uncharacterized protein LOC112283437
TrEMBLA0A2K1KE530.0A0A2K1KE53_PHYPA; Uncharacterized protein
STRINGPP1S77_230V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-14bHLH family protein