PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_26770V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 192aa    MW: 22070.5 Da    PI: 8.0436
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_26770V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-2076128456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        + +ftk ql++Le+ F++ + p+a+++  LA++lg+++rqV vWFqNrRa+ k
  Pp3c6_26770V3.2.p  76 KLRFTKAQLRVLEDTFQRLQRPNAHQKSTLAMELGVQTRQVEVWFQNRRARGK 128
                        568************************************************88 PP

2HD-ZIP_I/II88.77.5e-2975155282
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                        +k+r++k q+++LE++F++ ++ + ++K++la eLg+q+rqv+vWFqnrRAR k+k+ E+d+e+L+++++ l  en++L+ 
  Pp3c6_26770V3.2.p  75 QKLRFTKAQLRVLEDTFQRLQRPNAHQKSTLAMELGVQTRQVEVWFQNRRARGKAKRNESDCEVLRQRCQDLIVENHHLNY 155
                        79***************************************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.05470130IPR001356Homeobox domain
SMARTSM003892.2E-1572134IPR001356Homeobox domain
SuperFamilySSF466895.13E-1873129IPR009057Homeodomain-like
PfamPF000461.4E-1776128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-1977134IPR009057Homeodomain-like
CDDcd000861.26E-1478126No hitNo description
PRINTSPR000312.6E-5101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000312.6E-5110126IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGSSYDSYYN RSSFPGRENY LDYSSGNMGS CECAESSLSS AMTLQEQREM LRSVFPGRCS  60
DNSQDYEDDD EGSSQKLRFT KAQLRVLEDT FQRLQRPNAH QKSTLAMELG VQTRQVEVWF  120
QNRRARGKAK RNESDCEVLR QRCQDLIVEN HHLNYLIQSE RMGYDSRHLT SNGGPLLRMA  180
LCNNCKKLRN S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377391.11e-141homeobox-leucine zipper protein HOX17-like
RefseqXP_024377392.11e-141homeobox-leucine zipper protein HOX17-like
RefseqXP_024377393.11e-141homeobox-leucine zipper protein HOX17-like
RefseqXP_024377394.11e-141homeobox-leucine zipper protein HOX17-like
RefseqXP_024377395.11e-141homeobox-leucine zipper protein HOX17-like
TrEMBLA0A2K1KH981e-140A0A2K1KH98_PHYPA; Uncharacterized protein
STRINGPP1S53_4V6.11e-137(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-25homeobox-leucine zipper protein 3