PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_6300V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 366aa    MW: 39421.5 Da    PI: 6.8965
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_6300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.92.4e-312103197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++      ++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q++
  Pp3c5_6300V3.1.p   2 SCNGCRVLRKGCSDNCILRPCLqwietSEAQGHATVFVAKFFGRAGLMGFISAVPENQRSALFQSLLYEACGRTVNPVFGAVGLLWSGNWQIC 94 
                       6*********************9998777889************************************************************* PP

            DUF260  89 qlkaelall 97 
                       q++++++l 
  Pp3c5_6300V3.1.p  95 QAAVDTVLK 103
                       **9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6181107IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCILR PCLQWIETSE AQGHATVFVA KFFGRAGLMG FISAVPENQR  60
SALFQSLLYE ACGRTVNPVF GAVGLLWSGN WQICQAAVDT VLKGGTLRPS SPSSLPSYTS  120
ANLSFAAPCF PALAMPGNFA TPAAGKVDDP IQITLSSNAP AENSLDQHTV SLGIGLPEDN  180
YAVSNERLIS CHDKMNSGSW HSEAVVAQNM ETNSTWRNDG QCDNWNPLHS AGEFQRDGLG  240
HKSNELKQRG THMRGEYVTP RRVKGRVQAS PEANFLSGER ACEELPVPGN GAEQLELDLT  300
LKVKGVKGEK TVGNKRQSSP CDSVKSEGSV TSLDSSVHEP PKPCNWALEM SLMPPTFRTL  360
LPLMQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.60931e-123gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375699.10.0uncharacterized protein LOC112282397
RefseqXP_024375700.10.0uncharacterized protein LOC112282397
TrEMBLA0A2K1KIP40.0A0A2K1KIP4_PHYPA; Uncharacterized protein
STRINGPP1S41_47V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-66LOB domain-containing protein 37