PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_18850V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 453aa    MW: 48951.6 Da    PI: 7.9259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_18850V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09257304455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pp3c5_18850V3.2.p 257 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 304
                        8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17251321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.59E-11251308No hitNo description
Gene3DG3DSA:4.10.280.102.1E-16253320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6257304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDKLRAMGYP LGITMDPTKG DMVLQEASTQ HSLQQLSHDP SFAERAAKYS TFGTSNYAQR  60
PQTYGSYDTF RDTLENESKI SRSSSLNQLG SLGTNSDTRQ FVEEEMKPKG DQVDPKSEAM  120
MEAIEGAQGA RAAAVNESSD GVSQENSSGS QQTEPLSNRS GAPQRKRKGS AAADGKGKTS  180
TSSFASDGKD SKSMEANEQT SLKRQRSGPV KAERSASENS GDSVGPSSLK ASSKSVQNLP  240
KQDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV  300
QSLQRQIEFL SMKLAAVNPR LDYGFDVLGK DLLQLRSPET TLVGPDPLSG YVEMHHAQVH  360
HPMRMSPGCG LDMRSVESVC DSYLRRSMSV PTMGSLVSGD DFGDPLSQVC GNGDLQSVVE  420
MGFIQGRQSL GKGSLVNHGS SLCKSGKSKV EL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376877.10.0transcription factor bHLH49-like
RefseqXP_024376878.10.0transcription factor bHLH49-like
RefseqXP_024376879.10.0transcription factor bHLH49-like
TrEMBLA0A2K1KK910.0A0A2K1KK91_PHYPA; Uncharacterized protein
STRINGPP1S377_42V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-56bHLH family protein