PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_9600V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 421aa    MW: 45235.6 Da    PI: 8.1777
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_9600V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-391912921101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p+ +r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a
  Pp3c4_9600V3.1.p 191 PCGACKFLRRKCVRGCIFAPYFSAEQgASKFAAVHKVFGASNVAKLLVHIPTPHRSDAVLTISYEAQARLSDPVYGCVATIFALQQQVSSLQA 283
                       7*************************89***************************************************************** PP

            DUF260  93 elallkeel 101
                       ela+++++l
  Pp3c4_9600V3.1.p 284 ELAMVQAQL 292
                       *****9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.575190292IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-38191289IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MRVGCLIIAT FSGFTCFEKH IVSRLASPGS TTLRKLVGGE RVTSAVTGWG LGTNVDLEDR  60
RKRHPEGSDE LLLSGQDLEI WNPEAIRGAL ESWSGKDKDQ LDNWGHQLAE RNNPSGSKTQ  120
NLDTSGKEPG ATDSTSAGCT EQECGGALDN ATRTSSPVTT ARTGGGTNPN HSARRKGAGV  180
GYSSSMNNGA PCGACKFLRR KCVRGCIFAP YFSAEQGASK FAAVHKVFGA SNVAKLLVHI  240
PTPHRSDAVL TISYEAQARL SDPVYGCVAT IFALQQQVSS LQAELAMVQA QLADRQAHLQ  300
QTHHQQRIVF NQPPPEYMQQ HHLVDQAHVS SSPGLSMGMP GRSSAADTYS NSRVKEEVGY  360
RLQGMQQAAH HYFGMPSSSM EPTSAAQSLL SSLQKTRSVS MEDQPDEGEL QALASLLRRK  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-361892929111LOB family transfactor Ramosa2.1
5ly0_B1e-361892929111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373978.10.0uncharacterized protein LOC112281556
TrEMBLA0A2K1KMU80.0A0A2K1KMU8_PHYPA; Uncharacterized protein
STRINGPP1S190_23V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-55LOB domain-containing protein 20