PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_6860V3.1.p
Common NamePHYPADRAFT_86193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family BES1
Protein Properties Length: 347aa    MW: 36756.7 Da    PI: 8.1643
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_6860V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822124.61.3e-382095681
            DUF822  6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaea 81
                      k ++ E+E++k+RER+RRai++ki+aGLR++G+y+lp raD+n+VlkAL+ eAGwvve+DG+tyr +g+++++++  
  Pp3c4_6860V3.1.p 20 KLSASEKEKTKLRERQRRAITTKIFAGLRKYGGYNLPPRADINDVLKALASEAGWVVEPDGNTYRsQGFSQPSSS-L 95
                      56789************************************************************7787777222.2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3423186IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPKEAPSESN SKSGTSSMAK LSASEKEKTK LRERQRRAIT TKIFAGLRKY GGYNLPPRAD  60
INDVLKALAS EAGWVVEPDG NTYRSQGFSQ PSSSLHHSLR QSNPAMNRLQ QLIQPPTTIN  120
AGFNCTLAGL MGDAGELREG NCSTTASPSH HSMGGAAGHH SNSSSMTLMG SGCISNSPFA  180
SPASSEGGAP SQRLSQGNPY FTGLSNGFLP SCGQVLSDCH DGDSSGIKEE YAAAATYFSA  240
DTLDARDFQM QRATLDVAPH LLNCRDFSGR GFLNHTTTSM NNSMFFNTAA AAAAQPAPNR  300
FSSSRAADPH LSSLMMLSAG HPLFLQEQRA SNQNTPLGSP RLQDPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-103885391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-103885391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-103885391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-103885391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373853.10.0protein BZR1 homolog 4-like isoform X2
TrEMBLA0A2K1KMG80.0A0A2K1KMG8_PHYPA; Uncharacterized protein
STRINGPP1S143_29V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.13e-22beta-amylase 7
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]