PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_5300V3.6.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 867aa    MW: 94232.4 Da    PI: 6.5725
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_5300V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.5e-17664357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c4_5300V3.6.p  6 KYVRYTNEQVEALERVYHECPKPSSVRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 64
                      5678******************************9999*******************97 PP

2START1463.5e-461933973202
                       HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
             START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                       aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W ++++++e+l ++s++  g+++l
  Pp3c4_5300V3.6.p 193 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWLQDCRRMEVLGALSTAngGTIEL 284
                       78999****************************************************.8888888888*****************999***** PP

                       EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
             START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                        +++++a+++l+p Rd+ ++Ry+  l++g +vi+++S++  q   +    +s+vR+e++ Sg+li+p+++g++ +++v+h d + + ++++lr
  Pp3c4_5300V3.6.p 285 LYTQMYAPTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQGGHTmppVQSFVRGEMYSSGYLIRPCEGGGCIIHVVDHYDKEPWRVPEVLR 377
                       ***************************************988766555589****************************************** PP

                       HHHHHHHHHHHHHHHHHTXX CS
             START 183 slvksglaegaktwvatlqr 202
                       +l++s ++ ++k +  +l++
  Pp3c4_5300V3.6.p 378 PLYESPAVLAQKSTIGALRH 397
                       ***********998888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.435165IPR001356Homeobox domain
SMARTSM003891.4E-13369IPR001356Homeobox domain
SuperFamilySSF466895.56E-16568IPR009057Homeodomain-like
CDDcd000862.84E-15666No hitNo description
PfamPF000461.3E-14764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-18864IPR009057Homeodomain-like
CDDcd146860.001025894No hitNo description
PROSITE profilePS5084821.688182382IPR002913START domain
CDDcd088754.68E-77186402No hitNo description
SMARTSM002342.5E-35191401IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-20192396IPR023393START-like domain
PfamPF018521.2E-43193398IPR002913START domain
SuperFamilySSF559613.3E-35193402No hitNo description
PfamPF086709.4E-45723863IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS VRRHQLIKES PILANIEPKQ IKVWFQNRRC  60
REKQRKEATR LVSVNAKLTA LNKLLMEENE RLAKHTSQLT LENHALRQQI PNLPFPDGRH  120
RLPSHSPLKI EGAVNGGDES STQGGICVKL PGQAGVASTD TSCDSAVTGG LPHRVTPQHS  180
PRDTSPAGLL ATAEETLTEF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA  240
CGLVALDASK VTEVLKDRPA WLQDCRRMEV LGALSTANGG TIELLYTQMY APTTLAPARD  300
YCTLRYTTIL EDGNLVICER SLTGGQGGHT MPPVQSFVRG EMYSSGYLIR PCEGGGCIIH  360
VVDHYDKEPW RVPEVLRPLY ESPAVLAQKS TIGALRHLRR LAAEESGEGV PRNGHHPAVL  420
RILGQRLTKG FNDAVNGFGD DGWETTVTDG LDDVSVMVNA TPKSMEGQIA SDKLLYSLGG  480
GILCAKASML LQNVPPSLLI RFLREHRSEW ADYDMDDMAS FRSNGNGYVP RGGGVSHVQL  540
PLPLAQSGEC GEILEVVKLE GHSSVQHMVL SRDIFLLQLC SGIDESALGA CSQLIFAPVD  600
VALADGIPLL PSGFCVSPID TNVVDGFGLD RTLDLASTLE GGNDLRLNGD VKSNSSSGQM  660
RSVLTIAFQF AYEVHTRETV AAMARQYVRT VVASVQRVAM ALAPSRGAAP PRQAPSNPDA  720
LSLACHVLSS YRFHLGIDLV RPENGSDEAL FKAFWHHTDA IVCCAWKGMP EFVFANRSGL  780
EMFETATSSL QNLNWEKTLN ENDRKLSYAT FTQVLQQGYC SLPAGVRMSS TGRTVTYEQA  840
LAWKVLDDTK AVECIAFLFI NWSLVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.118230.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572040.0DQ657204.1 Physcomitrella patens class III HD-Zip protein HB14 mRNA, complete cds.
GenBankKU5305480.0KU530548.1 Physcomitrella patens C3HDZ3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373354.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373355.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373356.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373357.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0JIR40.0A0A0Y0JIR4_PHYPA; C3HDZ3
STRINGPP1S188_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]