PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_8460V3.1.p
Common NamePHYPADRAFT_231841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 561aa    MW: 62228.3 Da    PI: 8.0505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_8460V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-074775171055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r RR++iN+++ +L++l+P+      + ++ +++Le+A++++k L+
  Pp3c3_8460V3.1.p 477 RHRREKINERLKTLQRLVPNG-----EQVDIVTMLEEAIHFVKFLE 517
                       89*****************96.....58**************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-12466527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.087467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10471526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-10473522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-8476521No hitNo description
PfamPF000108.9E-5477517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGNYQKLSAD SASPSAYETI SASMHPPKVS SCEGMVWLEG WVSQASTNGE GSSSSTSAFK  60
LPEVVPTLPN TRLSFQDSGL LSNHWIPSFN TFSQHIPDIA AETLSLEFMQ ERLETLPEAS  120
FEELCMQHNS KPLYLNSIPS PVPNNHPHFD KSRREDFLHY AKTYAPFHAW QGLRVDRSPS  180
SPLAFHDTLT NSSGDEDTDG AQLRSTWLGK TSSTTIQLLR ASASENAWNN GQIKYNNSQK  240
LAKTDLLSNS NYSLSVVSNQ SHGNQSEILG SNRKGKAISR SEDFAFVRGH EPTASSHYEK  300
CMDPNGSFLP MSPIAQVLKY ATAGPSFVSN SQLQQSKTNF SNETNSTRGL TGNDLDLNFV  360
QKAQERLLAF QPASTASGYS ARVEQSRKNS YRFAMDRSSM SPSRRPNILG NQEAGLAWSP  420
YDTTQSRTTK SKLQCRHLLG TPSQAMDIIA VGPALNTNGR PRAKRGSATD PQSVYARHRR  480
EKINERLKTL QRLVPNGEQV DIVTMLEEAI HFVKFLEFQL ELLRSDDRWM FADPFIYNGM  540
DITGSYPHVP SGLERLNLRG *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563991e-107EF156399.1 Physcomitrella patens Rhd6-like 7 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KTQ20.0A0A2K1KTQ2_PHYPA; Uncharacterized protein
STRINGPP1S140_48V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-38ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]