PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_28970V3.1.p
Common NamePHYPADRAFT_163362
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 466aa    MW: 50441.3 Da    PI: 5.5339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_28970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08343383954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pp3c3_28970V3.1.p 343 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 383
                        699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-13335392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-11336388No hitNo description
SuperFamilySSF474591.31E-13338392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5344383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MTLSLRPDDR SALRTMEKWS NSGAGWSNHQ HPMLESSISP LFNYTQSHNG LQSQSMFLHP  60
MGAAEQQALV QAFVQANVGC MMDQPSQSGC GNLDSLLKSS NSSSMVDSSA SEMTSPDDDC  120
TGAPENNLHM NCIPSLGGGP VSPVLTSMLD RTASNGASLM AAHPQSKNDF FRMRSPGGPL  180
SPGASACAES EDSLHGGEAC APAMTGLKRR SFEGDDGDWM VDQMHLSQKV EKQHHQQQPE  240
KALAFQESFG GYNVEVASTV GLTATYSDSL TIPSLMQPSP QPFLRSSGNC GAASPVDLDE  300
FASMRAILFR HASQPVPSLE EIASSRPKRR NVRISKDPQS VAARHRRERI SDRIRVLQRL  360
VPGGTKMDTA SMLDEAIHYV KFLKLQLQTL EQIGNNGCDP RSFLEQGGAT EELANLVRPF  420
DLNCTAAFQT WPPQTTTMVN HGDTSPQGHN STEWACEANQ DDCPM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369340.10.0transcription factor bHLH83-like
TrEMBLA0A2K1KWE20.0A0A2K1KWE2_PHYPA; Uncharacterized protein
STRINGPP1S55_11V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-27bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]