PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_27900V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 437aa    MW: 47338.4 Da    PI: 6.6119
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_27900V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.9e-392043051101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+
  Pp3c3_27900V3.1.p 204 PCGACKFLRRKCVRGCIFAPYFSAEQgAAKFAAVHKVFGASNVAKLLLHIPAPRRGDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQ 295
                        7*************************89**************************************************************** PP

             DUF260  92 aelallkeel 101
                        aela+++++l
  Pp3c3_27900V3.1.p 296 AELAMVQTQL 305
                        *****99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.291203305IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-38204302IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLVQDSHANV SRELMLDQVK HEVFAYRYIS PNLPLLSSCF SSIPSEGEGE GWDLRSGDLA  60
EKGKRPASQQ SDEALRDRQE LETWNREASR EHLVSWTGSI TPRDKDLDQG WKDKDQLENW  120
GQHSGERNPG VSEGLSAHNL DSGREQGVTD SAAPGSTERE CAGGLDNAAR SASAAARART  180
LGAQDYSGRR NTSGYNSSMS SGAPCGACKF LRRKCVRGCI FAPYFSAEQG AAKFAAVHKV  240
FGASNVAKLL LHIPAPRRGD AVLTISYEAQ ARLSDPVYGC VATIFALQQQ VASLQAELAM  300
VQTQLADRNT HLQQQHHQQQ RMTMAFGASA SQAAEYIQHQ HLADHSQLSP TSGLSMGMPG  360
GSSAGPYSRV KEEGSYLHGM QAHHYDIGMP TTSMEPASMS TEQSLLESLQ RSRSGGMGDQ  420
PDEGELQALA SLFRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-362013058111LOB family transfactor Ramosa2.1
5ly0_B2e-362013058111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370367.10.0uncharacterized protein LOC112279864
TrEMBLA0A2K1KWB70.0A0A2K1KWB7_PHYPA; Uncharacterized protein
STRINGPP1S157_25V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-57LOB domain-containing protein 20