PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_24664V3.4.p
Common NamePHYPADRAFT_173346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 404aa    MW: 41200.7 Da    PI: 9.1604
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_24664V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-38742032110
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                        ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++  ++s +ssas         
  Pp3c3_24664V3.4.p  74 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----Mavaa 161
                        789*************************************************************9999955543333333333....12223 PP

                TCP  89 .....................kaaksaakskksqksaasalnl 110
                                             ++++s   ++++ ++  s + +
  Pp3c3_24664V3.4.p 162 agragmhgslglsgpgggptaEEMQSR-MQQEQAQRGRSEWGV 203
                        444556666777777776653222222.333333333333444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3578194IPR005333Transcription factor, TCP
PROSITE profilePS5136927.74580134IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAAMGGQGVG GGGGQVESTA LGMAGMGQEY GGGEGQSSGG VGGMGSMSMP GGSGEHQQQQ  60
TQQQVPAAPA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI  120
EWLLQKAEQA IIAATGTGTI PAIASSIQGS IRSSASMAVA AAGRAGMHGS LGLSGPGGGP  180
TAEEMQSRMQ QEQAQRGRSE WGVSADERVM DVSRRMSLGH GDPGMSHDLM AGFQHQDLVG  240
GPSEVGEGME SSDSRMRKRP RGGPLQSRMK EDPDQPARPV RTTARQSMQQ QVGQGQHQGG  300
GSSSMMPAAM WAVAPVGAGV SSSGTMPGTI WMLPMSASQG GATQGVMPGQ SEQQIWTFPA  360
ASGQYRMTAA AGTSIQLGPG GSGGSGQGHQ QGDSGDDHTS SHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.133120.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371651.10.0transcription factor TCP22-like isoform X3
TrEMBLA9U2R30.0A9U2R3_PHYPA; Predicted protein
STRINGPP1S446_21V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-27TCP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]