PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_24664V3.1.p
Common NamePHYPADRAFT_173346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 309aa    MW: 31767.3 Da    PI: 6.8026
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_24664V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP813.1e-25110924111
                TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........................k 89 
                        ++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++  ++s +ssas                              +
  Pp3c3_24664V3.1.p   1 MPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----MavaaagragmhgslglsgpgggptaE 88 
                        9*****************************************9999955543333333333....122234445566667777777776532 PP

                TCP  90 aaksaakskksqksaasalnla 111
                        +++s   ++++ ++  s + ++
  Pp3c3_24664V3.1.p  89 EMQSR-MQQEQAQRGRSEWGVS 109
                        22222.3333333333344444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.621139IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-22199IPR005333Transcription factor, TCP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPATCAARIF QLTRELGHKS DGETIEWLLQ KAEQAIIAAT GTGTIPAIAS SIQGSIRSSA  60
SMAVAAAGRA GMHGSLGLSG PGGGPTAEEM QSRMQQEQAQ RGRSEWGVSA DERVMDVSRR  120
MSLGHGDPGM SHDLMAGFQH QDLVGGPSEV GEGMESSDSR MRKRPRGGPL QSRMKEDPDQ  180
PARPVRTTAR QSMQQQVGQG QHQGGGSSSM MPAAMWAVAP VGAGVSSSGT MPGTIWMLPM  240
SASQGGATQG VMPGQSEQQI WTFPAASGQY RMTAAAGTSI QLGPGGSGGS GQGHQQGDSG  300
DDHTSSHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.133120.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371651.10.0transcription factor TCP22-like isoform X3
TrEMBLA0A2K1KVU90.0A0A2K1KVU9_PHYPA; Uncharacterized protein
STRINGPP1S446_21V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-15TCP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]