PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_2660V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 338aa    MW: 37311.3 Da    PI: 9.3424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_2660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.7e-10133180455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P++    sk   Ka +L + ++Y++sLq
  Pp3c2_2660V3.1.p 133 SHSLAERVRREKISERMKFLQDLVPSC----SKVTGKAVMLDEIINYVQSLQ 180
                       8*************************9....566*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-17127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-10127184No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-7133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMGSESWGEG QIQQDDSASS EPTATLRSRP GHALGKRKGS ASKDSIVTAK VLKSAEKKAK  60
CLSTKVAGAS ANASKAHVDE VRVTLKDQQS PESEPSGEMS PRSTLKSRSK SQVMHPKQHY  120
IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPSCS KVTGKAVMLD EIINYVQSLQ  180
RQIEFLSMKL AAVDPRLDIN LLNLLNKEPP QARSPETILM SPDIIAGYRD YQTQLQIQQI  240
NNYNVDWRSV GTLCDAYLKR SVNIALLPHA PAAYNECFID SLTQTLNGVC DAGDLQSIMH  300
TSSTPMRQEF FGQDTHNFAP GFPGLRHSTT GQLKVDH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397838.10.0transcription factor bHLH49-like
SwissprotQ9CAA93e-49BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2K1KZV70.0A0A2K1KZV7_PHYPA; Uncharacterized protein
STRINGPP1S7_37V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]