PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_3280V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 245aa    MW: 26671.1 Da    PI: 8.734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_3280V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26052.71.2e-16294197
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                       +C++C+vlr++C++ C+l+p++      +++  ++ +v+k+FG++ ++ +++a+pe++           A+ r+ +P+  avg++++++++++q
  Pp3c27_3280V3.1.p  2 SCNGCRVLRKGCSETCILRPCLqwienMEAKGYATVFVAKFFGRAGLMGFISAMPEHQL---------MACGRTMNPMFVAVGLLWSGNWHVCQ 86
                       6*********************8877666777999******************999984.........59************************ PP

             DUF260 90 lkaelall 97
                       ++++++l 
  Pp3c27_3280V3.1.p 87 AAVNTVLK 94
                       *9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.7771107IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-12291IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIENME AKGYATVFVA KFFGRAGLMG FISAMPEHQL  60
MACGRTMNPM FVAVGLLWSG NWHVCQAAVN TVLKGGSLSL LSLSICLLEN LSLSAPCFPA  120
IAKNGGLPFS STVRVDGPTQ MVFPLSLNAS EDNPFGRHTI SLGIGFPEAG GEESKERTRS  180
NFERITLDKS STIRTKKVCT YKGCAWLPGE SGPELKQYQW HLQPTVKCRM MNSQCLQMKP  240
SSSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375699.17e-68uncharacterized protein LOC112282397
RefseqXP_024375700.17e-68uncharacterized protein LOC112282397
TrEMBLA0A2K1IAH90.0A0A2K1IAH9_PHYPA; Uncharacterized protein
STRINGPP1S54_261V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-50LOB domain-containing protein 38