PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_5110V3.2.p
Common NamePHYPADRAFT_100170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 221aa    MW: 24181.1 Da    PI: 4.7978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_5110V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00054761111655
                        HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + + ++ Lr++lP       +  +Ka+iL  A +YI +Lq
  Pp3c25_5110V3.2.p  76 LDEQLSFLRSILPGT----TPGEEKASILMDAYQYIMKLQ 111
                        566777899999997....23479**************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-768122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-870125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.64E-5173206No hitNo description
PROSITE profilePS516719.499174220IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAHGNGSSSH NSGEGAEQHT REIDEEYFSE LDSADSENDE VPKAFETNIP RGSGKRTYGV  60
IVNDLHAERR LKNAKLDEQL SFLRSILPGT TPGEEKASIL MDAYQYIMKL QKCVDELNTE  120
LIPLSTASAN MSAGNLIVGS LQEAPDTQST RSASVCVSYQ HPMVEVKREE GKLEVHIACM  180
NRPGLLVDIM GALDSRRITV VHANIACREN AQLEALRLEV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365200.11e-163basic helix-loop-helix protein A-like
TrEMBLA0A2K1IDU31e-162A0A2K1IDU3_PHYPA; Uncharacterized protein
TrEMBLA9U1811e-161A9U181_PHYPA; Predicted protein
STRINGPP1S412_42V6.11e-162(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-17bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]