PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_8270V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 672aa    MW: 74766 Da    PI: 4.4607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_8270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.7e-5151311128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppG+rFhPtdeelv  yLk k+++kk+e  + i+evd+yk+ePwdLp  + v+++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+
  Pp3c24_8270V3.1.p   5 LPPGYRFHPTDEELVGIYLKCKINNKKIED-NPIAEVDLYKCEPWDLPdmSGVRGNDQEWYFYSARDKKYPNGFRANRATSRGYWKSTGKDR 95 
                        79*************************999.88**************95337777999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++  +  +g+kktLv+y grap+ge+tdWvmheyr+
  Pp3c24_8270V3.1.p  96 TVKC--TISTGMKKTLVYYIGRAPRGERTDWVMHEYRM 131
                        **99..7889**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-553154IPR003441NAC domain
PROSITE profilePS5100554.2555154IPR003441NAC domain
PfamPF023652.0E-266131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MARRLPPGYR FHPTDEELVG IYLKCKINNK KIEDNPIAEV DLYKCEPWDL PDMSGVRGND  60
QEWYFYSARD KKYPNGFRAN RATSRGYWKS TGKDRTVKCT ISTGMKKTLV YYIGRAPRGE  120
RTDWVMHEYR MEDKVYENLR GPQEPFVLAR VFKKSGSGPK NGEQYGAPFI EEPDSPLAGE  180
EDEVAPVEHP QPEVKVEPAL TPQVEYSESE IKPAVGNDMG FKELEDYLSD ELFETNDDNL  240
ADDNPDGVPD NTPRSAEDGI TLEDFIDEQS EADNVDDSWK EGVINNVDDF MLSDDISDGD  300
FDISSIPQHG MDINDMLAGP AEFVFTDGFL EINDLILPGG DLENFSSNIS AGEHEGLSSR  360
GSEIQLRPRR SSPRRMQFDP QGDTARRMLL MRHSESQQND LDRTLSSSRN LHTSASSRNL  420
SEFAERATSS LGFQRQSEEG CPVDGDLLSM AREDTGDLPD SDLWWNSVGT PPSSSSVDRQ  480
DATFPSHEGT YKSELDIASS ITDSASHYWQ TPDCLPSSSP PVADNPEKPP GKLSARINSL  540
LPPILPASAA ELPSFSNTYV TASDTHVTAL TITCSCSENG AKTVQAVMMN IAGGKVHQEM  600
MSGTWKPCTE DCKQQSCVQC SQRRKSQRPV AKGSKSGFVF VFLLGVVSTV IWFLLLRSSW  660
RMARFMHDLI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-42516017171NO APICAL MERISTEM PROTEIN
1ut4_B9e-42516017171NO APICAL MERISTEM PROTEIN
1ut7_A9e-42516017171NO APICAL MERISTEM PROTEIN
1ut7_B9e-42516017171NO APICAL MERISTEM PROTEIN
3swm_A1e-41516020174NAC domain-containing protein 19
3swm_B1e-41516020174NAC domain-containing protein 19
3swm_C1e-41516020174NAC domain-containing protein 19
3swm_D1e-41516020174NAC domain-containing protein 19
3swp_A1e-41516020174NAC domain-containing protein 19
3swp_B1e-41516020174NAC domain-containing protein 19
3swp_C1e-41516020174NAC domain-containing protein 19
3swp_D1e-41516020174NAC domain-containing protein 19
4dul_A9e-42516017171NAC domain-containing protein 19
4dul_B9e-42516017171NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159740.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S73_182V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-67NAC domain containing protein 2