PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_2500V3.1.p
Common NamePHYPADRAFT_160092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 420aa    MW: 45887.2 Da    PI: 8.5315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_2500V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021187210323
                        ET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                        C   +Cg+ Fs ++ L+ H+ + H
  Pp3c24_2500V3.1.p 187 CVypKCGEAFSKPEALEMHQVVrH 210
                        66669**************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704185215IPR007087Zinc finger, C2H2
PROSITE patternPS000280187210IPR007087Zinc finger, C2H2
SuperFamilySSF563995.56E-21212418No hitNo description
Gene3DG3DSA:3.90.228.105.1E-16214418IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPGPCFSWAK SISFKAKSIS FKSDSGSDIS HESRFGSFSS TPLRGDHPKS PSRSNGCSQG  60
CTPSIANLKE MLQGNSTLLG SRSVSHPSTC ESLPKDEVVV HKTKNADSLH RAPLKTKPTR  120
SFLKQYSISN VQEATRTSKE LVNTVAKSKD NLCFVKGCSE CSMHCNSGEG GIVIRDTHHH  180
DALSPKCVYP KCGEAFSKPE ALEMHQVVRH AVSELGRGNP SLNVIEIIFK TSWSVEAPCV  240
RIERILKIDN TDRHISEFQS YRDAVKKSAS DEGMQHERCL ADGNELLRFY GSSFVCSLGT  300
NGSTALCSMA SCNVCSIIRW GFAVRNERGI FTTATSGKAH EIITAREKEN WRGKHAMLVC  360
RVIAGRICKT LDKASRFIDA SCLPDGYDSV SPGMATNLDE LTVFNPKAVL PCFLVVYSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364710.10.0uncharacterized protein LOC112277014
TrEMBLA0A2K1IF900.0A0A2K1IF90_PHYPA; Uncharacterized protein
STRINGPP1S18_217V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-59C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]