PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_3290V3.3.p
Common NamePHYPADRAFT_229808
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 395aa    MW: 43227.7 Da    PI: 8.5724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_3290V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09170216455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h +rEr+RRd++  ++  L +llP+a      K + a ++e A+ ++ksLq
  Pp3c23_3290V3.3.p 170 EHIIRERQRRDDMAAKYLILESLLPPA-----AKRERAVVVEDAISFVKSLQ 216
                        699***********************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.252166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7169233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10169234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-7171219No hitNo description
SMARTSM003539.8E-6172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDIELDDILH WQMPLCTLLA DIEIPEGNID GMLSIELPEI SDPVAVETAS SLPNSLSASD  60
KRTSSPLWPC DLPPSVSNSK DIHLAAHPPA NLFASNCALV GSSQSSSAPL AGVNSLTGSH  120
EVEPVTPPAA KRKRTRGSRA STKRSTKVKP KPEAVVVELS KEARLPTQAE HIIRERQRRD  180
DMAAKYLILE SLLPPAAKRE RAVVVEDAIS FVKSLQHKRT ELLKRRVKLK VAAQHQSCNG  240
QSISCCQNKK LMVSREPPGF LTASCVKKSA ENRRTDSPIS SSIKVQDIMI KPNSSTAGDL  300
NTTVKPLQIQ VHFSEEEVVV EMVCSHQRPN FQSFVLQAVE SFGLDVTRYS IQRLTHGVVH  360
CIITCNKSQL PWLALEIQTS ASLIGDLRRV LMHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361886.10.0uncharacterized protein LOC112275612
RefseqXP_024361887.10.0uncharacterized protein LOC112275612
RefseqXP_024361888.10.0uncharacterized protein LOC112275612
RefseqXP_024361889.10.0uncharacterized protein LOC112275612
TrEMBLA0A2K1IHZ50.0A0A2K1IHZ5_PHYPA; Uncharacterized protein
STRINGPP1S94_148V6.11e-165(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.13e-07bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]