PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_13220V3.1.p
Common NamePHYPADRAFT_197420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 421aa    MW: 46223.6 Da    PI: 8.8102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_13220V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017189210323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         Cp+Cg+ F  ++ L+ H+ + H
  Pp3c23_13220V3.1.p 189 CPKCGEAFFKPEALELHQVVrH 210
                         *****************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280187210IPR007087Zinc finger, C2H2
SuperFamilySSF563994.99E-19212419No hitNo description
Gene3DG3DSA:3.90.228.102.2E-16215419IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPGPCFSWAK SISFKAKSIT FKSDSGSEIS HESRSGSFSS TPLRGEHSKS PPRRYGCTQG  60
CTPSIANLKE MLQGNSSLLS SKSSSHSSSC ASPPKNESYI HQTKNGDYMY RAPLQSKPNR  120
TFRKQNSFGS AQEVTRTSRE LVNIDVSTKE NLCLVKGCCE CSKHCNPGGG RIFPRDPQHH  180
GSLSPKCFCP KCGEAFFKPE ALELHQVVRH AVSELGSGNS SLNVIEIIFK TSWSVKGAPC  240
TRIERILKID NTEKHISEFH NYRDAVKKAA ADEGMQHERC LADGNELLRF YGSSFMCCLG  300
INGSTNLCSM SACNVCSIIR WGFAVRKEKG IFTTASSGKA HEIIMAEEKE NWRGKHAMLV  360
CRVIAGRIFR SPERTSRVHH ASCLPDGYDS VSPGSATNLD ELTVFNPKAV LPCFLVVYTI  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.180780.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362662.10.0uncharacterized protein LOC112275993
TrEMBLA9TR290.0A9TR29_PHYPA; Predicted protein
STRINGPP1S294_7V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-64C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]