PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_5950V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 253aa    MW: 26559 Da    PI: 8.8019
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_5950V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.85.2e-45121111100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+ye++ar++dPvyG+vg i+ lq+q++ql++
  Pp3c22_5950V3.2.p  12 PCAACKFLRRKCTEECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHRREDAVNSLAYESDARVKDPVYGCVGAISVLQRQVAQLQT 103
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el+ +++ 
  Pp3c22_5950V3.2.p 104 ELSIAHSD 111
                        ***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.64411112IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-4412109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKRGMASSSS FPCAACKFLR RKCTEECVFA PYFPPDQPHK FANVHKIFGA SNITKLLNEL  60
PTHRREDAVN SLAYESDARV KDPVYGCVGA ISVLQRQVAQ LQTELSIAHS DLARYTGGAS  120
SSLGIGTGLL PGQVYREHML TREQLMDLAR GDPSHLSREH LMELARAGVN SYEALQALGL  180
SGALGPLGPF PSSSRLVGES ANRSGGGGGG GSGASGSTIG GQIPSPQWTR GGKSYVLACA  240
MSSTLNNSAS IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-591212811131LOB family transfactor Ramosa2.1
5ly0_B1e-591212811131LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.134870.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}.
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360127.10.0protein LATERAL ORGAN BOUNDARIES-like isoform X1
SwissprotQ9FML42e-59LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2K1IMF30.0A0A2K1IMF3_PHYPA; Uncharacterized protein
STRINGPP1S12_355V6.11e-169(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-61LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]