PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_8930V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 468aa    MW: 51820.4 Da    PI: 8.4953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_8930V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11264314155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h   Er+RR+ +N+ + + r llP++    s K +K++++   v+YI+ Lq
  Pp3c1_8930V3.1.p 264 QRKSHIWSERQRRRSMNQLYTTMRALLPHQ----SVKTDKSTVVLDIVNYIRTLQ 314
                       799**************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-11262318No hitNo description
PROSITE profilePS5088813.408263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-12264318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13264331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYDQQQGMQS FSTGYVFPDR LEQQSKMREP VGDDFFFNRD HGSSGSFLRK PQPLCRMVGY  60
NVTHLNCLPC FPQQQSQTPP LPLIDRDIQP GRRTSCGDFL SAESTFRFPP QMQNANNVVP  120
GSLELNQGVT LGHRALSFVR GDPPMEQASK QADDQMADFK VTCFVHEQDG SDLRQTWCQP  180
SDQVITNLPS SGPAQASRHH CLGPAPKRTY PYSTTTFESG GESNRPAHHI STSGRRRELA  240
PKKGRRHMIP KRTAQAVLSN VVSQRKSHIW SERQRRRSMN QLYTTMRALL PHQSVKTDKS  300
TVVLDIVNYI RTLQAELEML SRRRDRLVTT RNLHQKSSQA FSAHGLTCVD HTSDASVLTA  360
VTTLPPPGSA SCLASFLGNN VAIHICGHHL FVTITAPAQL CLLTHIIATL DSYNLNVLSI  420
AVNSRDNTTA YSLSVEASQV AEAIGDDLHT ALQIVINNFS SSEIEAA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374595.10.0uncharacterized protein LOC112281865
RefseqXP_024374604.10.0uncharacterized protein LOC112281865
RefseqXP_024374613.10.0uncharacterized protein LOC112281865
TrEMBLA0A2K1L7M70.0A0A2K1L7M7_PHYPA; Uncharacterized protein
STRINGPP1S38_120V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.13e-13bHLH family protein