PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_40040V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 410aa    MW: 44948.5 Da    PI: 5.8688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_40040V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.2e-07286327955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r RR+ri ++   L+  +P       +K++ a++L +A++Y+k Lq
  Pp3c1_40040V3.2.p 286 ARHRRERISDRVRVLQHFVPGG-----TKMDTASMLDEAIHYVKFLQ 327
                        699*****************87.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-13282337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-10283331No hitNo description
SMARTSM003533.5E-12283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12283335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSQSLRANDC SEFPDMEVWL NARTKWSENH DVHAESSVSV PLSFHSDETL ITGAGSLFED  60
SRKEDVTLRP FLKLETMGLC VENQNARLLS ARSAGMVDSS CNEEDISEQA SSVALSVIPS  120
GTVSAADFLD QAPRVDEVAN LYMEADSPHG LLFSTGLQLE TTSRTASHKR VLDDSSEASC  180
MQVADVQSQS RKSPKVQHGP VLLQDDGLQV PVDYVPFVAM AKPSQAHFAI STSATFLPTS  240
PGNVVPAVLF PTPLTLPNVP SMEEIAQTRP KRRNVRISSD PQSVAARHRR ERISDRVRVL  300
QHFVPGGTKM DTASMLDEAI HYVKFLQQQL QAMERISRGG SVMMPEVGYN YNAGRVLDLD  360
YGSHETHPSK SMAPPASQQS VPTRLDKTWA TNPLHSQGLR DPVLQQFCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370203.10.0uncharacterized protein LOC112279736
TrEMBLA0A2K1LBM00.0A0A2K1LBM0_PHYPA; Uncharacterized protein
STRINGPP1S163_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-27bHLH family protein