PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_4900V3.3.p
Common NamePHYPADRAFT_171589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 266aa    MW: 29523.5 Da    PI: 4.0341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_4900V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.8e-0768109955
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Err R ri + +e L  ++P+ +        +K++iL  A eYI +Lq
  Pp3c19_4900V3.3.p  68 ERRLRGRIHEQLELLGAVIPSsC------SGEKSSILADAYEYIEKLQ 109
                        9********************65......57899*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.12759108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-966122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-866119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.47E-568113No hitNo description
PfamPF000101.7E-468109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.37E-5179232No hitNo description
Gene3DG3DSA:3.30.70.2605.9E-5179237No hitNo description
PROSITE profilePS5167110.478183264IPR002912ACT domain
CDDcd021160.00397184236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MALSTGLPLE FNDAVDYFNY TNQDYSSDLT DTENDEEYAC TPRGFQPILP RSCKRTYGVF  60
LESEVVPERR LRGRIHEQLE LLGAVIPSSC SGEKSSILAD AYEYIEKLQR QVEELNYELD  120
MESYLGDDLC HCEDDCSCCE HNLSPSSTER TAESNAGLES SSGSDCGCSQ PTVEIVRTEE  180
GLKIHIECDK RPGLLVEIME LLESRGLNVE QASIACVDQL VFDGISSEIE GNDAEDSRHM  240
THVNAEDVEA SLRSLIADQR QCTSH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.160560.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356358.10.0transcription factor SCREAM2-like
TrEMBLA9TRW40.0A9TRW4_PHYPA; Predicted protein
STRINGPP1S300_66V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.18e-18bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]