PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_9980V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 363aa    MW: 38487.1 Da    PI: 8.3755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_9980V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.24.1e-312103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q+
  Pp3c18_9980V3.1.p   2 SCNGCRVLRKGCSEACILRPCLqwidsADAQGHATVFVAKFFGRAGLMGFITAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWAGNWQV 93 
                        6*********************9998666778************************************************************ PP

             DUF260  88 eqlkaelall 97 
                        +q+++e++l 
  Pp3c18_9980V3.1.p  94 CQAAVETVLK 103
                        ****998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2781107IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACILR PCLQWIDSAD AQGHATVFVA KFFGRAGLMG FITAVPENQR  60
PALFQSLLYE ACGRTVNPVF GAVGLLWAGN WQVCQAAVET VLKGGVLKAP SSCSPSFSTL  120
PQGPLHPSIP GTDTPAGSRG RDSLMPSVLI SAKESTHDLC KPRAGIASTP GQFQMTNVYE  180
SKDHAAAAAA VKSTWDRKWD GNFQQNDLPK KQEQGAAKGN VKSNLIMWSE AVGSVAHKVG  240
EKRERDFSMG AHVLAPAPRR LKPCVVGEYG FPGGMAIKES LCDDQETVVG STEHLDLGLT  300
LKVKDGKGGQ ITGLKRVYSP CDSVNSEGSV TSLDTTPPHV RPSFLSPMFG GDMGCKLLPL  360
LS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.190480.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402097.10.0LOB domain-containing protein 36-like
RefseqXP_024402098.10.0LOB domain-containing protein 36-like
TrEMBLA0A2K1J0I90.0A0A2K1J0I9_PHYPA; Uncharacterized protein
STRINGPP1S19_217V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.17e-66LOB domain-containing protein 37