PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_3900V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 1207aa    MW: 135713 Da    PI: 6.6009
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_3900V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.9e-1110251081155
                AP2    1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                         s+y+GV++++ +gr++A+++d s+   g   +r + g +  +e+Aaka++ a++k++g
  Pp3c18_3900V3.2.p 1025 SKYRGVTRHRHTGRFEAHLWDNSKvkLGlA-RRGRQGAYTDEEQAAKAHDLAALKYWG 1081
                         89*******************655444443.55566777777**************98 PP

2AP248.22.7e-1511241172152
                AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52  
                         s+y+GV+++++ grW+A+I        +  k+++lg+++t+eeAa a+++a+  
  Pp3c18_3900V3.2.p 1124 SKYRGVTRHHQEGRWEARIGRH-----SgaKYHYLGTYDTEEEAAVAYDRAAVL 1172
                         89****************9995.....346*********************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1110251091IPR016177DNA-binding domain
PfamPF008471.2E-710251081IPR001471AP2/ERF domain
CDDcd000184.70E-1510251091No hitNo description
Gene3DG3DSA:3.30.730.101.9E-1110261089IPR001471AP2/ERF domain
SMARTSM003806.7E-1510261095IPR001471AP2/ERF domain
PROSITE profilePS5103216.37110261089IPR001471AP2/ERF domain
PfamPF008471.7E-911241170IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1711241185IPR016177DNA-binding domain
CDDcd000185.18E-2311241185No hitNo description
Gene3DG3DSA:3.30.730.105.6E-1811251183IPR001471AP2/ERF domain
SMARTSM003801.1E-2711251189IPR001471AP2/ERF domain
PROSITE profilePS5103217.21411251183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1207 aa     Download sequence    Send to blast