PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_21620V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 260aa    MW: 28112.3 Da    PI: 6.444
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_21620V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.54e-1096139851
                         HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         +r   NReA r++R++Kka ++ Lee v  L a N++L k+l+ 
  Pp3c17_21620V3.1.p  96 KRPLGNREAVRKYREKKKAHTAYLEEQVNHLRALNQQLVKRLQG 139
                         67778**********************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1189156IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-1294157No hitNo description
PfamPF077163.0E-1494145IPR004827Basic-leucine zipper domain
CDDcd146865.15E-1395147No hitNo description
SuperFamilySSF579591.13E-795139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDDGELEFTD HDVFAGCSLC DLPSTPTTTG SMESFLDEIL RSTHACTHTH TCNPPGPDNT  60
HTHTCYHTHT HLFAAGEEET SADKSETLTS GHNSKKRPLG NREAVRKYRE KKKAHTAYLE  120
EQVNHLRALN QQLVKRLQGQ ASLESEVIRL RSILSEFRGR IDAEIGSFPV QASKCPTSTA  180
LVAKTVPNGE CEVQPLSGGF CLNTVSVPCV TDVPCLHTSA SGTSLSRPPM TPSSEPAKWH  240
GNSPTSDCVP SDSTAMHMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.80710.0gametophore| protonema| sporophyte
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401501.10.0basic leucine zipper 23-like
RefseqXP_024401502.10.0basic leucine zipper 23-like
RefseqXP_024401503.10.0basic leucine zipper 23-like
SwissprotQ8GTS21e-62BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A2K1J4Y50.0A0A2K1J4Y5_PHYPA; Uncharacterized protein
STRINGPP1S34_90V6.11e-161(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-54bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]