PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_10200V3.1.p
Common NamePHYPADRAFT_230424
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 428aa    MW: 47429.2 Da    PI: 7.4474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_10200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09224268554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h +rEr+RRd++ ++f  L ++lP+a     +K + a++ +  ++Y+k+L
  Pp3c17_10200V3.1.p 224 HIIRERQRRDDMTNKFLLLESILPPA-----PKRDRATVIKDSIQYVKNL 268
                         899**********************9.....7****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.33E-13221286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12223289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6224268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-8224273No hitNo description
SMARTSM003531.8E-6225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESTPHRGGV PDPNDVNLLS RSFSMDFASM LESTDGVLHQ QIDEYLQGPA DHHQFNHDDG  60
TGFSIPYSEP LSFAAASPPF QSIMSVETLQ GSNVMKQSLG RNSHHCGPEI QSKIQYVQML  120
PISIGAANLC APHQQIHDMG FLEPSSFERE LQAPAQPDMF YHCSSEPGAV IPGEVSGYEQ  180
SCSPDNFRGT TCESIGPQSE LGAGNLFQKD QVVKGKRPTD AVGHIIRERQ RRDDMTNKFL  240
LLESILPPAP KRDRATVIKD SIQYVKNLRH RVKNLHQKRS QMRSKLTNVS FLSPTAIMQK  300
KNEKKLLTPT NSQALLQTSV ASDDIVSCPI HSDEMGKTTD IEKVKVHVDL PHQVVIEMTC  360
RQQPRVQIRL LKTLESMGLD VSRCSVSKIR SHLLFSIIVK PRMMAEPPLT SKDIVQALKL  420
AVAPADL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400112.10.0transcription factor MYC2-like
TrEMBLA0A2K1J3D40.0A0A2K1J3D4_PHYPA; Uncharacterized protein
STRINGPP1S105_201V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9572213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-12bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]