PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_1150V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 186aa    MW: 20170.4 Da    PI: 9.6538
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_1150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26034.36.5e-11261155
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                       +C++C++lr++C+  C+l+ ++      + +  ++  ++k+FG++ ++ +++a+ e++r+
  Pp3c16_1150V3.1.p  2 SCNGCRMLRKGCSGYCILRSCLqwmesSKVHGYATVLLAKFFGRAGLMGFISAVTEDQRP 61
                       6*********************7764323334788899******************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.1E-7261IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSCNGCRMLR KGCSGYCILR SCLQWMESSK VHGYATVLLA KFFGRAGLMG FISAVTEDQR  60
PVGLLQSGNW QICEAAVDTV LKDDSRRLMS PSSSLPSNLS DSLLYSRAFA MPEKLSLSLA  120
GRVHDPTTVM FPLSLNVSAD TTLNPCTINL GHCIARARRA KGRTMSKPDP VTYRVSKGWS  180
WAGAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375699.15e-42uncharacterized protein LOC112282397
RefseqXP_024375700.15e-42uncharacterized protein LOC112282397
TrEMBLA0A2K1J6P11e-134A0A2K1J6P1_PHYPA; Uncharacterized protein
STRINGPP1S144_102V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-34LOB domain-containing protein 37