PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_21350V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 93aa    MW: 10442.1 Da    PI: 10.924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_21350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26039.51.7e-122990157
              DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeereda 57
                        +C++ +vlr++C++ C+l+p++      ++q +++ +v+k FG++ ++ +++a++e++r+ +
  Pp3c15_21350V3.1.p 29 SCNGYRVLRKSCSNTCILRPCLewiesSDAQGHATIFVAKYFGRAGLMGIISAVHETQRPVT 90
                        6*********************9998666778**************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.9122892IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-92989IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDRSRLKGSK RSNERRKKIL DRAWNSKMSC NGYRVLRKSC SNTCILRPCL EWIESSDAQG  60
HATIFVAKYF GRAGLMGIIS AVHETQRPVT AP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525255.14e-30LOB domain-containing protein 37
SwissprotQ9FN114e-29LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SZE83e-29LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2K1JDZ61e-62A0A2K1JDZ6_PHYPA; Uncharacterized protein
STRINGPP1S454_4V6.12e-63(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-31LOB domain-containing protein 39
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]