PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_1680V3.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 467aa    MW: 51415.8 Da    PI: 8.763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_1680V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09259303554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h +rEr+RRd++ ++f  L +llP+      +K + ++++   veY+k+L
  Pp3c15_1680V3.3.p 259 HIIRERQRRDDMTNKFLILESLLPPG-----PKRDRSTVVDDSVEYVKNL 303
                        999*********************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.633254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.83E-12256325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6259303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-8259308No hitNo description
SMARTSM003537.4E-8260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MPGMYTTGME KTHHGNGVND NASPSGYSLD YASFLDGADS ALQQQLYQYL QGPSVHRENH  60
PGQVEEVDGF TNGTPLYQTG AASFEAGPSH FQSMPVEPLQ ARTDVVQQSI LDGSLCHSGH  120
NGGRISEYAT NSDAGRSIRK HIKAIGTSTP GCLQQLSPLG TFLPHRHLYS TNHQPGSNFE  180
CGVSQAPGRP KLVDASGSPS VYIPRERSGY ETSCSPNSLK RTRSELVIPQ SRTFRGPNSQ  240
VVDSGPKTSF RRPNDQAGHI IRERQRRDDM TNKFLILESL LPPGPKRDRS TVVDDSVEYV  300
KNLHQRLKDT QKRRADILKA HAALSSEVLT VHTPKQNNRA TCHNLSSPDL RKVAVNAAFI  360
RTSPESKEID SDAKKKASCI DNIQVHVDLP HQIVIEMTCR SHPHIQSQIM KELERLAMDI  420
SRCSMAKHQD RLVCVIIMKP RIVSKSPTTS DDITEALKRA LVPEAS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397681.10.0uncharacterized protein LOC112292923
RefseqXP_024397682.10.0uncharacterized protein LOC112292923
RefseqXP_024397683.10.0uncharacterized protein LOC112292923
RefseqXP_024397684.10.0uncharacterized protein LOC112292923
RefseqXP_024397685.10.0uncharacterized protein LOC112292923
RefseqXP_024397686.10.0uncharacterized protein LOC112292923
RefseqXP_024397687.10.0uncharacterized protein LOC112292923
TrEMBLA0A2K1JBI90.0A0A2K1JBI9_PHYPA; Uncharacterized protein
STRINGPP1S124_18V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-11bHLH family protein