PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12420V3.4.p
Common NamePHYPADRAFT_170746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 202aa    MW: 22397.8 Da    PI: 4.6595
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12420V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY41.62.2e-13511650163
             FLO_LFY  50 eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaekk 128
                         +l+ +f ++G+r  tv ki+e+Gft++tL+   d el  l++s+ + +   l +Ge +Gik a  a++ +l++            e     
  Pp3c15_12420V3.4.p   5 DLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE----- 85 
                         6899*************************98654.7888888888754..3668********9..667777775555443333331..... PP

             FLO_LFY 129 rrkllsedeetaldal.sqeglseepvqeekeaags 163
                              sed+ + +  + s+e+++ ep ++ +++++ 
  Pp3c15_12420V3.4.p  86 -----SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 116
                         .....4444443333313444444554443333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.3E-7666IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASIDLDTFF DGFGLRPETV FKIKEMGFTA KTLMSNVDEL PSLLESINQH HLLTLGEEWG  60
IKGAAKKWQL DQTYAPHPED EKWPESEDTC KEVACIDSEE VTQLEPCSKW MQQQQQGQQL  120
PSSHNHLGPS NLTGSNLSPS NQGVSDVGPG GSPGRVGYYT NLLSYQSQGN ARFDIMREVD  180
VTSQRQPQIK HSFDHVVGTT F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396205.11e-149uncharacterized protein LOC112292190
TrEMBLA0A2K1JCY11e-148A0A2K1JCY1_PHYPA; Uncharacterized protein
STRINGPP1S258_46V6.11e-133(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]