PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12420V3.3.p
Common NamePHYPADRAFT_170746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 250aa    MW: 27421.6 Da    PI: 4.4924
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12420V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY41.62.1e-135216449163
             FLO_LFY  49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127
                          +l+ +f ++G+r  tv ki+e+Gft++tL+   d el  l++s+ + +   l +Ge +Gik a  a++ +l++            e    
  Pp3c15_12420V3.3.p  52 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 133
                         4799**************************98654.7888888888754..3668********9..667777775555443333331.... PP

             FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163
                               sed+ + +  + s+e+++ ep ++ +++++ 
  Pp3c15_12420V3.3.p 134 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 164
                         ......4444443333313444444554443333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.5E-753114IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLASLDLSQS WQEGVNGFSE TLLSGAGVFD CLNSSAKVIG VPWKDGIIMA SIDLDTFFDG  60
FGLRPETVFK IKEMGFTAKT LMSNVDELPS LLESINQHHL LTLGEEWGIK GAAKKWQLDQ  120
TYAPHPEDEK WPESEDTCKE VACIDSEEVT QLEPCSKWMQ QQQQGQQLPS SHNHLGPSNL  180
TGSNLSPSNQ GVSDVGPGGS PGRVGYYTNL LSYQSQGNAR FDIMREVDVT SQRQPQIKHS  240
FDHVVGTTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396205.11e-151uncharacterized protein LOC112292190
TrEMBLA9TLG91e-160A9TLG9_PHYPA; Predicted protein
STRINGPP1S258_46V6.11e-134(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]