PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12420V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 337aa    MW: 37290 Da    PI: 7.2041
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12420V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY40.93.5e-1313925149163
             FLO_LFY  49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127
                          +l+ +f ++G+r  tv ki+e+Gft++tL+   d el  l++s+ + +   l +Ge +Gik a  a++ +l++            e    
  Pp3c15_12420V3.1.p 139 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 220
                         4899**************************98654.7888888888754..3668********9..667777775555443333331.... PP

             FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163
                               sed+ + +  + s+e+++ ep ++ +++++ 
  Pp3c15_12420V3.1.p 221 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 251
                         ......4444443333313344444554443333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.5E-7140201IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP  60
TVPDDAREEL RLIEIAREQT QRKRKPVKTR GVRGTSSPSD HSSGSADHFD GKGGSGRKGG  120
RISLQHELLA RMGIIMASID LDTFFDGFGL RPETVFKIKE MGFTAKTLMS NVDELPSLLE  180
SINQHHLLTL GEEWGIKGAA KKWQLDQTYA PHPEDEKWPE SEDTCKEVAC IDSEEVTQLE  240
PCSKWMQQQQ QGQQLPSSHN HLGPSNLTGS NLSPSNQGVS DVGPGGSPGR VGYYTNLLSY  300
QSQGNARFDI MREVDVTSQR QPQIKHSFDH VVGTTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396205.10.0uncharacterized protein LOC112292190
TrEMBLA0A2K1JCY10.0A0A2K1JCY1_PHYPA; Uncharacterized protein
STRINGPP1S258_46V6.10.0(Physcomitrella patens)