PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_14370V3.7.p
Common NameHB10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 881aa    MW: 95987.3 Da    PI: 6.472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_14370V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-171573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c12_14370V3.7.p 15 KYVRYTQEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73
                        5678******************************9999*******************97 PP

2START151.57e-482054103203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +    v e+l+d+++W ++++++e+l ++ +g  g++
  Pp3c12_14370V3.7.p 205 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDIS-KVTEVLKDRPRWLQDCRRMEILGALPTGngGTI 294
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a+++l+p Rd+ ++Ry+  l++g  vi+++S++  q  p+    +s+vR+e++pSg+li+p+++g++ +++v+h + + ++++
  Pp3c12_14370V3.7.p 295 ELLYTQMYAPTTLAPaRDYCTLRYTTILEDGNVVICERSLSGVQGGPTmppVQSFVRGEMYPSGYLIRPCDGGGCIIHVVDHYNNEPWSVP 385
                         ******************************************99999888899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++  +k ++a+l+++
  Pp3c12_14370V3.7.p 386 EVLRPLYESPAVLSQKSTLAALRHL 410
                         *********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861074IPR001356Homeobox domain
SuperFamilySSF466895.13E-161177IPR009057Homeodomain-like
SMARTSM003891.3E-131278IPR001356Homeobox domain
CDDcd000861.36E-151575No hitNo description
PfamPF000461.8E-141673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146860.0010467103No hitNo description
PROSITE profilePS5084821.443194408IPR002913START domain
CDDcd088759.08E-79198414No hitNo description
SMARTSM002345.5E-38203413IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-20204408IPR023393START-like domain
PfamPF018524.3E-45205410IPR002913START domain
SuperFamilySSF559612.61E-35205413No hitNo description
PfamPF086709.1E-43735877