PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20560V3.1.p
Common NamePHYPADRAFT_178680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family DBB
Protein Properties Length: 222aa    MW: 24828 Da    PI: 6.6823
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20560V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.7e-07434535
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                         C+ +e  +++lfC  ++  lC +C ++ H+
  Pp3c11_20560V3.1.p  4 LCDVCEAAPARLFCAADEAALCLKCDEKVHS 34
                        7***************************993 PP

2zf-B_box26.91e-085392338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                         ++C+ +e+ ++ +fC  +++ lC +C +  H g    H+
  Pp3c11_20560V3.1.p 53 VPRCDICENAPAFFFCGVDGTSLCLQCDMDVHVGgkkaHE 92
                        689***************************9966666675 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PfamPF006433.9E-6342IPR000315B-box-type zinc finger
CDDcd000214.28E-7334No hitNo description
PROSITE profilePS501198.7885196IPR000315B-box-type zinc finger
SMARTSM003362.2E-95196IPR000315B-box-type zinc finger
PfamPF006433.9E-75292IPR000315B-box-type zinc finger
CDDcd000216.97E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRTLCDVCEA APARLFCAAD EAALCLKCDE KVHSCNKLAY RHVRLELAES RPVPRCDICE  60
NAPAFFFCGV DGTSLCLQCD MDVHVGGKKA HERYLMMRQR VELPSRKLRF EDTVDTEKPT  120
AEPNSVPADK NGTLLPDQHH HHHYHHHHHH HHHEDELRAG LPASKPSCDR DNSNAPAIAI  180
AAGDEESLLL DDCLVQNQSR MIDLNSRPKR LQNQASVPDK G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.125280.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387802.11e-162B-box zinc finger protein 18-like
RefseqXP_024387803.11e-162B-box zinc finger protein 18-like
SwissprotC0SVM52e-50BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA9RVR61e-161A9RVR6_PHYPA; Predicted protein
STRINGPP1S31_376V6.11e-162(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-53DBB family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]