PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_20170V3.6.p
Common NamePHYPADRAFT_166708
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 328aa    MW: 36274.7 Da    PI: 7.1888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_20170V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-072471354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +  rEr RRd++N+ f++L  +l + +     +K++K +iL + +  +k+L
  Pp3c11_20170V3.6.p 24 LQKADRERLRRDHLNEQFAKLAGVLDPiR-----PKNDKGTILSEGILALKEL 71
                        56778******************999955.....8********9877766666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3952171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-102186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-102193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-52276No hitNo description
PfamPF000102.1E-42471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MANPEYRGRV AGEENCHLMP ARKLQKADRE RLRRDHLNEQ FAKLAGVLDP IRPKNDKGTI  60
LSEGILALKE LRAEIARLKS EQIALRDESR DLTVERCELQ EEKTLLETET ERLEDLRKQN  120
SENLSALAGW KMDHPGVLTS SQYPCPLPVS SMTKSSPPSK DIHQDPSSDQ THHAPDSSFL  180
PAAPFSTFLH PAYQTYGVFG SRKSPFMSYN HYSHPGHTTH VERPAARYPA PIHPTPIYPV  240
KGAQTKSTEP SVVATELQLQ TPGLPPSPTH QQSLSGNEQR EKRVDRALDV LRDSGIDGTK  300
AASCNDNFAP QLSLSSNALA LQVVQSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.30020.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389006.10.0transcription factor bHLH121-like isoform X3
TrEMBLA9SV250.0A9SV25_PHYPA; Predicted protein
STRINGPP1S123_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.24e-24bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]