PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_14310V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 506aa    MW: 51679.6 Da    PI: 7.5364
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_14310V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.5e-37701952105
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqq++++i+++tgt++++a ++  ++s +ss+s        
  Pp3c10_14310V3.2.p  70 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQQSEQSIIAATGTGTIPAIASsIQGSIRSSSS----Mava 156
                         789*************************************************************9999955532222222222....1222 PP

                 TCP  89 ......................kaaksaakskksqksaa 105
                                               ++++s ++++++q++  
  Pp3c10_14310V3.2.p 157 aagragihgslglagpgggltaEEMQSRMQQEQAQRERG 195
                         344556667777888888877533333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-3474193IPR005333Transcription factor, TCP
PROSITE profilePS5136927.51276130IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAAMGGQGVG GGVGQVDPTA LAMAGMGQEY SGNEGQSSGG VGGMGSMSMP GGSGEQQQQQ  60
TPTPPAKKPP PKRTSTKDRH TKVDGRGRRI RMPATCAARI FQLTRELGHK SDGETIEWLL  120
QQSEQSIIAA TGTGTIPAIA SSIQGSIRSS SSMAVAAAGR AGIHGSLGLA GPGGGLTAEE  180
MQSRMQQEQA QRERGEWVTS AGEHVMEVTR AMEASRRISL GHGDPGMSHD MMAGFQHQDL  240
VGGPSEMGEG MESPDSRLRK RPRGTLQSRM KEDPDQPARP VRATARQSMQ QQQQQQVGQG  300
QHQGGGSSSM MPAAMWAVAP VGAGVPSSGA MPGTIWMLPV SASQGGPTSG VMSGQSEQQI  360
WTFPTASGQY RMTAAAGTSI QLGPGGSGGS GQGNAPTSSS SGQAMVPLTA LPSGVALMPR  420
MNVQGGMGPE LQGSHMGHHM PLGSMLLQQG GQQMPGTGLG LGSEGHLGML AALNAYSRNV  480
TSDHQSMGGS GHQQGDSGDD PTSSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262RLRKRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387677.10.0transcription factor TCP22-like
TrEMBLA0A2K1JZ100.0A0A2K1JZ10_PHYPA; Uncharacterized protein
STRINGPP1S348_6V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-24TCP family protein