PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651811.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 334aa    MW: 37197.7 Da    PI: 9.0613
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651811.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.4e-32177233158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  XP_016651811.1 177 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRIRGSGGRF 233
                     57****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.7E-37175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.988176236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-24179201IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-28179233IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.1E-24210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSKFFPTAIF FAYSRLTRSQ SQSSVQSMPL YTTNCMSWNP IEREIQQSSS KDASFKVEFT  60
PQVHHDAKHL GLQLLPDQGS SSTTQTISQS QDRCNSSESG EDEICGKGVE GQMKPVYLLN  120
NLDLMSNPSQ VGYGNLMGRV PYPYADPYFS GFLAAYGPQT MMIAPTRVPL PLDLAEDGPI  180
YVNAKQYHGI LRRRQSRAKL EAQNKLLKAR KPYLHESRHL HALNRIRGSG GRFLSTKRLQ  240
QSDQNPSSST HDVPDSVNLH QKDTQDTESH HLGSSEFVTA VATHSDIASV SHTNDIFRQQ  300
DHRFSGIPSH MGGAMQFRGG LMRAGTQHCA SVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21177237262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651811.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLM5W4940.0M5W494_PRUPE; Uncharacterized protein
STRINGXP_008242196.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-50nuclear factor Y, subunit A3