PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651085.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 321aa    MW: 36023.7 Da    PI: 7.1902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651085.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18113162255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + + +r++lg+f tae Aa a++aa+++++g
  XP_016651085.1 113 HYRGVRQRP-WGKFAAEIRDP---N-KaARVWLGTFETAEAAALAYDAAALRFKG 162
                     7********.**********9...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32112171IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-21113171IPR016177DNA-binding domain
PfamPF008476.2E-13113162IPR001471AP2/ERF domain
SMARTSM003802.4E-36113176IPR001471AP2/ERF domain
PROSITE profilePS5103224.118113170IPR001471AP2/ERF domain
CDDcd000185.95E-20113171No hitNo description
PRINTSPR003671.2E-10114125IPR001471AP2/ERF domain
PRINTSPR003671.2E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
FSIKLHLYIH QGYQQGHKVD RKHGKRPFPG DESEEKAEDH QIFESFSSAR SQQEMSAMVS  60
ALAQVIGITD QTPVVQMPAE PLANPLPSAT ELHDDQPPQL QAAQNQGNVR RRHYRGVRQR  120
PWGKFAAEIR DPNKAARVWL GTFETAEAAA LAYDAAALRF KGSKAKLNFP ERVQGGTELG  180
HLTTTGPQDL AAGGSRRTEL AHYNQPLSDH QYQLQANPNN VNFTQPDQYA QYFRGGNYEN  240
LSYDVLPNTF YERERSFVSQ TLSATTTTSS VPFVPYQQED QDQHVQQQQP LSFSMAQQPF  300
GSSSSSSSDP YKKKKDFGQH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28112176469ATERF1
3gcc_A4e-28112176469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651085.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651085.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like, partial
SwissprotQ9FH541e-50EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A251P8C11e-148A0A251P8C1_PRUPE; Uncharacterized protein
STRINGXP_008239643.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.18e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]