PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650496.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 311aa    MW: 35680.1 Da    PI: 8.3383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650496.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.58.1e-2231119190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fYn YA ++GF +r s+++k +++ge+t++++vC k+g++ +++ +  ++rr+r  tr+gCkakl + k+k ++k+ v  +++ HnH+++
  XP_016650496.1  31 NFYNMYAAKAGFGIRCSTTRKCTMTGEVTSKEYVCCKQGYALTSTVS--HKRRRRGCTRIGCKAKLAILKMKdKNKYIVVGFNEVHNHDMT 119
                     6*****************************************99888..99*****************999989**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1931119IPR004330FAR1 DNA binding domain
PfamPF105519.5E-23240311IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MECERQVTPE VRSELKPKLK LEFDCCDDVF NFYNMYAAKA GFGIRCSTTR KCTMTGEVTS  60
KEYVCCKQGY ALTSTVSHKR RRRGCTRIGC KAKLAILKMK DKNKYIVVGF NEVHNHDMTT  120
VDKFHLLRSH RNLTEATKAY SADMSKVNVP VPKQLSLLEV QVGGLENVGF VKRDVYNYVR  180
DVCGEVIGHD AELLKEHFMT MQEKNESFYF KMEVDSEGRM GNVFWSDVRS RRAYGFFGDV  240
VVFDTTFNTN RYGMVFAPLL GFNNHRQTVL FGCAFLTSET TDSFVWLLEE FKKTMPGEPP  300
KMIITDQDAA M
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650496.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D5X91e-104A0A067D5X9_CITSI; Uncharacterized protein
TrEMBLV4URE31e-102V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_008228816.11e-150(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-54FAR1-related sequence 5